SNP Profiles matching MARPER 27

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AA	GG	TT	CC
1._RUQ_1642	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AA	GG	_	CC
2._RUQ_1642	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AA	GG	_	CC
3._PA_195_[PER]	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AA	GG	_	CC
4._RUQ_1576	_	GG	GG	CC	_	AA	AA	CC	CG	TT	_	GG	_	CC
5._RUQ_1642	_	GG	GG	CC	_	AA	AA	CC	CG	TT	_	GG	_	CC
6._RUQ_1642	_	GG	GG	CC	_	AA	AA	CC	CG	TT	_	GG	_	CC
7._PA_195_[PER]	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	_	CC
8._PA_195_[PER]	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	_	CC
9._PA_195_[PER]	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	_	CC
10._PA_195_[PER]	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	_	CC
11._GC-05-166-4-19	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	CC	CC
12._GC-05-166-4-19	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	CC	CC
13._GC-05-166-4-19	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	CC	CC
14._GC-05-166-4-19	AT	GG	GG	CC	GG	AA	AA	CC	CG	TT	AG	GG	CC	CC
15._PA_128_[PER]	AT	GG	AG	CC	GG	AA	AA	CC	CG	TT	AA	-	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27
_Input profile	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
1._RUQ_1642	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
2._RUQ_1642	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
3._PA_195_[PER]	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
4._RUQ_1576	_	_	_	AG	_	_	_	_	_	CC	CG	GG	_	X_X
5._RUQ_1642	_	_	_	AG	_	_	_	_	_	CC	CG	GG	_	X_X
6._RUQ_1642	_	_	_	AG	_	_	_	_	_	CC	CG	GG	_	X_X
7._PA_195_[PER]	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
8._PA_195_[PER]	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
9._PA_195_[PER]	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
10._PA_195_[PER]	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
11._GC-05-166-4-19	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
12._GC-05-166-4-19	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
13._GC-05-166-4-19	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
14._GC-05-166-4-19	CG	AA	CC	AG	AG	AA	CC	CC	CC	CC	CG	GG	CC	X_X
15._PA_128_[PER]	CG	AA	CC	AG	AG	AA	CC	CT	CC	CT	GG	GG	CC	X_X

Input profile: MARPER_27

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 491A

Dapeng Zhang, 2014

1._PA_195_[PER] RUQ_1642

identical
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_195_[PER] RUQ_1642

identical
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_195_[PER]

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B C165 T1

Dapeng Zhang, 2016

4._PA_124_[PER] RUQ_1576

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_195_[PER] RUQ_1642

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PA_195_[PER] RUQ_1642

identical
14 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._PA_195_[PER]

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._PA_195_[PER]

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 1 > FP

Dapeng Zhang, 2016

9._PA_195_[PER]

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 2 > FP

Dapeng Zhang, 2016

10._PA_195_[PER]

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 5 > FP

Dapeng Zhang, 2016

11._PA_195_[PER] GC-05-166-4-19

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._PA_195_[PER] GC-05-166-4-19

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

13._PA_195_[PER] GC-05-166-4-19

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_195_[PER] GC-05-166-4-19

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

15._PA_128_[PER]

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D272 T2

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP32	2	TcSNP150	3	TcSNP230	4	TcSNP242	5	TcSNP429
6	TcSNP469	7	TcSNP529	8	TcSNP534	9	TcSNP577	10	TcSNP619
11	TcSNP645	12	TcSNP723	13	TcSNP836	14	TcSNP891	15	TcSNP929
16	TcSNP953	17	TcSNP994	18	TcSNP998	19	TcSNP1062	20	TcSNP1075
21	TcSNP1165	22	TcSNP1270	23	TcSNP1350	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP1520